I'm stumped: Can tools that are destined for the toolshed use <options
from_data_table="..." ...> ?
In a blast_reporting.xml tool script I have
<param name="filter_column" type="select" label="Col">
<filter type="static_value" value="numeric"
<filter type="sort_by" column="name"/>
But when this gets submitted as a tar file into a toolshed repository, toolshed
comes back with cryptic:
Metadata may have been defined for some items in revision '5bbb25b32de2'.
Correct the following problems if necessary and reset metadata.
blast_reporting.xml - invalid literal for int() with base 10: 'type'
I eliminate the <filter type="static_value" value="numeric" column="type" />
line, but similar problem is still reported
blast_reporting.xml - invalid literal for int() with base 10: 'name'
This hints that maybe the toolshed, when it tests the code, it doesn't know
what/where blast_reporting_fields is? Is there some special location that the
blast_reporting_fields.loc file should be located within the uploaded tar file?
(I tried putting it in various relative paths in the tar file, i.e. root, and
p.s. the tool runs file with menu functioning in galaxy itself.
Thanks for any pro tips you folks can come up with!
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