Hi John,

Fix confirmed - nice timing, I just finished my lunch break :)

Thanks!

Peter


On Tue, Feb 18, 2014 at 12:35 PM, John Chilton <jmchil...@gmail.com> wrote:

> That should be fixed now, sorry about that.
>
> -John
>
> On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock <p.j.a.c...@googlemail.com>
> wrote:
> > On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock <p.j.a.c...@googlemail.com>
> > wrote:
> >>
> >> Hi all,
> >>
> >> I just updated my development server, and ran into what looks
> >> like a missing dependency:
> >>
> >> $ ./run.sh
> >> ...
> >> galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
> >> galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
> >> configured runner plugins
> >> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
> >> workers
> >> galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
> >> 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
> >> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
> >> workers
> >> Traceback (most recent call last):
> >>   File
> "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
> >> line 39, in app_factory
> >>     app = UniverseApplication( global_conf = global_conf, **kwargs )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in
> >> __init__
> >>     self.job_manager = manager.JobManager( self )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31,
> >> in __init__
> >>     self.job_handler = handler.JobHandler( app )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31,
> >> in __init__
> >>     self.dispatcher = DefaultJobDispatcher( app )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line
> 576,
> >> in __init__
> >>     self.job_runners = self.app.job_config.get_job_runner_plugins(
> >> self.app.config.server_name )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line
> 496,
> >> in get_job_runner_plugins
> >>     rval[id] = runner_class( self.app, runner[ 'workers' ],
> **runner.get(
> >> 'kwds', {} ) )
> >>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
> >> 45, in __init__
> >>     self.client_manager = build_client_manager(**client_manager_kwargs)
> >>   File
> >>
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> >> line 41, in build_client_manager
> >>     return MessageQueueClientManager(**kwargs)
> >>   File
> >>
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> >> line 89, in __init__
> >>     self.exchange = LwrExchange(self.url, self.manager_name)
> >>   File
> >>
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
> >> line 37, in __init__
> >>     raise Exception(KOMBU_UNAVAILABLE)
> >> Exception: Attempting to bind to AMQP message queue, but kombu
> dependency
> >> unavailable
> >>
> >>
> >> $ hg summary
> >> parent: 13557:75b13d642f94 tip
> >>  Allow LWR runner to publish/consume messages via message queue.
> >> branch: default
> >> commit: 9 modified, 240 unknown
> >> update: (current)
> >>
> >> (Local modifications mostly extra logging lines; nothing which
> >> looked relevant here)
> >>
> >> Regards,
> >>
> >> Peter
> >
> >
> >
> > Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
> > https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
> >
> > Peter
> >
> >
> > ___________________________________________________________
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