We've connected our Galaxy instance to a slurm cluster via slurm-drmaa
, and use the DRMAAJobRunner plugin configured according to the
Galaxy admin wiki . It works pretty well, but it should be noted
that the nativeSpecification options slurm-drmaa makes available to
you (that is, options like those you'd pass to sbatch) are *not*
complete. For example, one of our IT guys just patched slurm-drmaa to
add support for the --cpus-per-task option, which wasn't present in
On Mon, Mar 10, 2014 at 5:33 AM, Jillian Rowe
> Hello all,
> I would like to get galaxy to submit jobs to slurm using the drmaa. Galaxy
> exists on its own machine, and slurm is run on a cluster.
> I am at a bit of a lose as to how to do this. I have galaxy installed and
> working fine, and slurm works fine on its own. I saw a blog post detailing
> how to get the two connected, but it seems like maybe it was outdated.
> Any tips?
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Brian Claywell, Systems Analyst/Programmer
Fred Hutchinson Cancer Research Center
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