Hi Sebastian,
I'm going to move this over to the [email protected] mailing list so
that it reaches the development community effectively. I personally do
not know the answer, but I am sure we can get you some help.
Best,
Jen
Galaxy team
https://wiki.galaxyproject.org/MailingLists
On 3/21/14 9:28 AM, Sebastian Luna Valero wrote:
Dear All,
I am trying to add a new tool in Galaxy and I have the following problem.
Let me explain a simplified example. Let's imagine that my script
works from CLI as follows:
python script.py --input "input-file" --pattern "output-pattern"
After processing "input-file", the script writes several output files
and their name is given according to "output-pattern".
The number of output files depends on the content of "input-file". The
output files are written to the current working directory where
script.py is located.
In the simplest scenario, I get only one output file in the working
directory.
My problem is that I would like to see the output files in Galaxy's
history without modifying the CLI interface.
To solve this problem, I have looked at the wiki page:
https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files#Number_of_Output_datasets_cannot_be_determined_until_tool_run
and the email here:
http://dev.list.galaxyproject.org/Multiple-output-files-do-not-appear-in-history-td4660470.html
However, I think that mine is a different scenario. I do not want to
add new output parameters in the CLI. I would like Galaxy to bring
these output files to my history without modifying the CLI options, is
that possible?
Many thanks in advance for your help!
Best regards,
Sebastian.
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