On Tue, Apr 29, 2014 at 2:59 PM, Dave Bouvier <d...@bx.psu.edu> wrote: > Peter, > > Based on the latest test run, and my own investigations, it would appear > that the samtools compilation process is looking in the wrong include path > for ncurses/ncurses_dll.h. My recommendation would be to replace the > following: > > -I$NCURSES_INCLUDE_PATH/ncurses/ > > with > > -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH > > in the shell_command for package_samtools_0_1_19's tool_dependencies.xml > that starts with: sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*| > > --Dave B.
Thanks Dave, That sounds like it would be more robust to subtle server changes. I see Bjoern has been working on this today with a slightly different change - I'll leave this in his capable hands: https://github.com/bgruening/galaxytools/commits/master/orphan_tool_dependencies/package_samtools_0_1_19/tool_dependencies.xml Regards, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/