Hi Dave, This problem persists (or has reoccured),
This tool dependency's required tool dependency samtools version 0.1.19 has status Error. Did you discover anymore last week? Sorry for the lag in my reply, I busy with other things. Thanks, Peter On Mon, Apr 21, 2014 at 2:24 PM, Dave Bouvier <[email protected]> wrote: > Peter, > > From what I've been able to determine, samtools' failure was due to an error > in the testing environment startup process, which in turn caused errors in a > number of tool dependency packages. I've fixed the initial error, and the > next test run should result in a successful samtools installation. > > --Dave B. > > > On Mon 21 Apr 2014 06:52:50 AM EDT, Peter Cock wrote: >> >> Hi all, >> >> This samtools dependency error is now showing for all my >> Test ToolShed repositories using the samtools package: >> >> http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats >> http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_depad >> http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler >> >> Looking at the package itself, it looks like a ncurses (or curses) >> library dependency problem - perhaps something changed on >> the ToolShed server configuration? >> >> http://testtoolshed.g2.bx.psu.edu/view/iuc/package_samtools_0_1_19 >> >> Regards, >> >> Peter >> >> >> On Wed, Apr 16, 2014 at 11:43 AM, Peter Cock >> <[email protected] <mailto:[email protected]>> wrote: >> >> Hi all, >> >> I'm working on a new wrapper for "samtools depad" (which I >> have been using with MIRA v4 output), now on the Test ToolShed: >> >> http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_depad >> >> The unit tests work for me locally and via TravisCI. >> >> The nightly ToolShed tests are failing - something seems to have gone >> wrong with the samtools dependency ("status Error") event though >> the samtools package is listed as a successful installation. Odd... >> >> Any thoughts? >> >> Thanks, >> >> Peter >> >> -- >> >> Automated tool test results >> >> Automated test environment >> *Time tested:* 2014-04-16 05:07:24 >> *System:* Linux 3.8.0-30-generic >> *Architecture:* x86_64 >> *Python version:* 2.7.4 >> *Galaxy revision:* 13078:6f698dec5895 >> *Galaxy database version:* 118 >> *Tool shed revision:* 13018:e20408b06d65 >> *Tool shed database version:* 22 >> *Tool shed mercurial version:* 2.2.3 >> >> >> Installation errors >> Tool dependencies >> Type Name Version >> samtools package 0.1.19 >> Error >> This tool dependency's required tool dependency samtools version >> 0.1.19 has status Error. >> >> Successful installations >> Repository dependencies/- installation of these additional >> repositories is required/ >> >> Tool shed Name Owner Changeset revision >> testtoolshed.g2.bx.psu.edu <http://testtoolshed.g2.bx.psu.edu> >> package_samtools_0_1_19 iuc 36aa94676939 >> >> >> >> >> >> _______________________________________________ >> galaxy-iuc mailing list >> [email protected] >> http://lists.bx.psu.edu/listinfo/galaxy-iuc ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
