Nate and John,

I tried with pbs-drmaa and it crashed my galaxy server when the server was
started and tried to load the drmaa library .
However, I am able to make the drmaa library that comes with TORQUE working
with galaxy if sudo is not use.. With sudo,
there are still problems I am working to resolve.

Ping


On Thu, Jul 24, 2014 at 10:10 AM, Nate Coraor <n...@bx.psu.edu> wrote:

> On Jul 22, 2014, at 2:13 PM, John Chilton <jmchil...@gmail.com> wrote:
>
> Running jobs as the "real" user is not available with the PBS job
> runner - one has to use the DRMAA interface to submit jobs as the real
> user.
>
>
> That said, the DRMAA runner plugin is compatible with Torque, you just
> need to compile and use pbs-drmaa, rather than Torque's libdrmaa:
>
>     http://apps.man.poznan.pl/trac/pbs-drmaa
>
> --nate
>
>
> I have created a Trello card to add this functionality:
> https://trello.com/c/OddS8bMP
>
> Would be happy to field pull requests to add this - because I doubt
> anyone on the core team will be able to get to this anytime soon.
> Sorry I don't have better news.
>
> -John
>
> On Sun, Jul 20, 2014 at 11:26 PM, Ping Luo <luop0...@gmail.com> wrote:
>
> I have installed pbs_python module on our cluster to interface Galaxy with
> TORQUE. I am able to submit and run jobs on our cluster as the Galaxy user.
> I need to run Galaxy jobs as the real user. The instruction in the user
> guide is for DRMAA interface. How can I configure running jobs as real user
> for TORQUE?
>
> thank,
>
> Ping
>
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