On Mon, Jul 28, 2014 at 11:03 AM, Wolfgang Maier <wolfgang.ma...@biologie.uni-freiburg.de> wrote: > Dear all, > > I noticed that with params of type "text" Galaxy seems to replace certain > characters before passing them to the shell. As examples, it changes "@" to > "__at__", "}" to "__cc__" and "\" to "X". > Is this the standard behavior or am I doing something wrong ? And if it's > standard, are there workarounds ? > > Best, > Wolfgang
This is standard behaviour to prevent special characters being used to construct malicious command lines. It can be configured within your tool definition using the <sanitizer> tag set: https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Csanitizer.3E_tag_set Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
