Hi Dave, You are right that on closer inspection I've mixed tool_dependencies.xml and repository_dependencies.xml *again*. Evidentially my mental model does not match Greg's here:
(*) I need to define a tool installation recipe for something not in the Tool Shed --> write an install script called tool_dependencies.xml (*) I need to depend on a Python package by pointing at another repository in the Tool Shed --> repository_dependencies.xml (*) I need to depend on a datatype package by pointing at another repository in the Tool Shed --> repository_dependencies.xml (*) I need to depend on a binary package by pointing at another repository in the Tool Shed --> repository_dependencies.xml ? No. You need tool_dependencies.xml for this too. But that aside, the test framework error here is completely unhelpful. Why is there no error message about missing a dependency? Was there an error from running my tool which was not shown? Thanks, Peter On Wed, Jul 30, 2014 at 6:07 PM, Dave Bouvier <d...@bx.psu.edu> wrote: > Peter, > > I believe part of the problem is that the install and test framework is > unable to resolve the dependency on blast+ 2.2.29 because it is defined as a > repository dependency, not a tool dependency. I would recommend replacing > the repository dependency in the blast_rbh repository with a tool dependency > definition that references package_blast_plus_2_2_29. > > --Dave B. > > On 07/30/2014 05:27 AM, Peter Cock wrote: >> >> Hi all, >> >> I'm not sure when this started (having hardly looked at my Tool Shed >> test results since GCC2014), but I think this is a fairly recent problem >> with my BLAST RBH tests failing (which has held me back from posting >> this to the main Tool Shed). >> >> This could be some silly mistake in my tar-ball, but usually missing >> test files and the like get an explicit error. The tests are passing >> on my GitHub/TravisCI setup (using Twill and the API backend): >> e.g. https://travis-ci.org/peterjc/galaxy_blast/builds/30592097 >> >> Here is the current error (the same for the last few Test Tool Shed >> runs), https://testtoolshed.g2.bx.psu.edu/view/peterjc/blast_rbh >> >> Traceback (most recent call last): >> File >> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py", >> line 108, in test_tool >> self.do_it( td ) >> File >> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py", >> line 35, in do_it >> self._verify_outputs( testdef, test_history, shed_tool_id, >> data_list, galaxy_interactor ) >> File >> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py", >> line 69, in _verify_outputs >> galaxy_interactor.verify_output( history, output_data, >> output_testdef=output_testdef, shed_tool_id=shed_tool_id, >> maxseconds=maxseconds ) >> File >> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py", >> line 53, in verify_output >> self.wait_for_history( history_id, maxseconds ) >> File >> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py", >> line 107, in wait_for_history >> self.twill_test_case.wait_for( lambda: not self.__history_ready( >> history_id ), maxseconds=maxseconds) >> File >> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/twilltestcase.py", >> line 2453, in wait_for >> result = func() >> File >> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py", >> line 107, in <lambda> >> self.twill_test_case.wait_for( lambda: not self.__history_ready( >> history_id ), maxseconds=maxseconds) >> File >> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py", >> line 257, in __history_ready >> return self._state_ready( state, error_msg="History in error state." >> ) >> File >> "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py", >> line 316, in _state_ready >> raise Exception( error_msg ) >> Exception: History in error state. >> >> Is a more detailed log available which might help debug this? >> >> Thanks, >> >> Peter >> >> As an aside, this looks like the Test Tool Shed is still using the >> Twill backend for the functional tests? >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. 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