On Thu, Jul 31, 2014 at 5:21 PM, bjoern.gruen...@googlemail.com
<bjoern.gruen...@gmail.com> wrote:
> Hi Peter,
>
>
> 2014-07-31 10:57 GMT+02:00 Peter Cock <p.j.a.c...@googlemail.com>:
>
>> Hi Dave,
>>
>> You are right that on closer inspection I've mixed tool_dependencies.xml
>> and repository_dependencies.xml *again*. Evidentially my mental model
>> does not match Greg's here:
>>
>> (*) I need to define a tool installation recipe for something not in the
>> Tool Shed --> write an install script called tool_dependencies.xml
>>
>> (*) I need to depend on a Python package by pointing at another repository
>> in the Tool Shed --> repository_dependencies.xml
>
> I might be wrong, but I think that also goes to tool_dependencies.xml

Correct, e.g.
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_select_by_id

Thanks!

>>
>> (*) I need to depend on a datatype package by pointing at another
>> repository in the Tool Shed --> repository_dependencies.xml
>>
>> (*) I need to depend on a binary package by pointing at another repository
>> in the Tool Shed --> repository_dependencies.xml ? No. You need
>> tool_dependencies.xml for this too
>
> As far as I understood, everything that is referenced in the tool.xml under
> the requirement section, needs to be in a tool_dependencies.xml file. Any
> other dependency are from the repository (data_types, data_manager,
> workflows ...).
>
> Ciao,
> Bjoern

Sure, there is a logic here - but its a definition which I seem to still
struggle with :(

>> But that aside, the test framework error here is completely unhelpful.
>>
>> Why is there no error message about missing a dependency?
>> Was there an error from running my tool which was not shown?
>>
>> Thanks,
>>
>> Peter

I'd still like to get a more explicit error from the test suite than
"History in error state" though ;)

Regards,

Peter
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