Having a difficult time with coding the "configure" step in this new
tool_dependency.xml file, namely that an error "/bin/sh: configure: command not
found" results when I try to install my beta development tool from a local test
toolshed (which is downloading and installing other tools just fine).
<action type="shell_command">git clone
<action type="shell_command">git reset --hard
<action type="shell_command">configure --disable-gui
Any hints about why this isn't being found or what the /bin/sh needs to get it
When I do a git reset --hard, the "configure" file is definitely there, with
executable flag set. Any other permission oddities?
I've also tried <action type="autoconf"></action> , which yeilds same error.
(Skipping that line and doing <action type="make_install"></action> at least
finds and runs "make", though it errors out for lack of input data).
Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre for
655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: