That was it! Yay!  I'll add a Trello card to have this info gem added to the 



Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre for 
Disease Control
655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada
From: Aaron Petkau []
Sent: Friday, August 01, 2014 12:26 PM
To: Dooley, Damion
Subject: Re: [galaxy-dev] Toolshed tool_dependency.xml git archive configure 

Hmmm... you know what.  I tested this out and it looks like Galaxy expects the 
git repo to be named the same as the package name in your tool dependencies 
file ffp-phylogeny.  If you change the git command to:

git clone ffp-phylogeny

I think it should work.

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