Hmmm... you know what. I tested this out and it looks like Galaxy expects the git repo to be named the same as the package name in your tool dependencies file ffp-phylogeny. If you change the git command to:
git clone https://github.com/apetkau/ffp-3.19-custom.git *ffp-phylogeny* I think it should work. Aaron On Fri, Aug 1, 2014 at 2:09 PM, Dooley, Damion <[email protected]> wrote: > A little more info: > > <action type="shell_command">ls -a</action> > > ############################################# > ls -a > STDOUT > . > .. > ############################################# > > ############################################# > ls -a > STDERR > > so I guess the .git archive is being unpackaged somewhere else! After > lunch I'll return to explore this mysterious territory. > > d.
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