Hi all,

I do have a version 0.1 wrapper for STAR under our oqtans package, however
it is not yet in toolshed.
https://github.com/ratschlab/oqtans_tools/tree/master/STAR/2.3/

​Feel free to comment,
​
​
Vipin | Rätsch Lab

On Wed, Sep 24, 2014 at 4:55 PM, Curtis Hendrickson (Campus) <
curt...@uab.edu> wrote:

> Bjorn
>
> We'd be interested in this tool, as well. Any idea how close to functional
> it is?
> I see it's only on TEST toolshed, and not on production, at this point.
>
> I don't see any related Trello card when searching on "star"
>
> Regards,
> Curtis
> Galaxy Admin @ University of Alabama at Birmingham
>
> -----Original Message-----
> From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:
> galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Björn Grüning
> Sent: Wednesday, September 24, 2014 3:15 PM
> To: galaxy-dev@lists.bx.psu.edu; hoove...@helix.nih.gov >> David Hoover
> Subject: Re: [galaxy-dev] tool for STAR RNA-seq aligner
>
> Hi David,
>
> yes there is inital code in the https://testtoolshed.g2.bx.psu.edu/. I
> think Ross has done some work on it.
> The main problem with Star is that is needs special indices (and a lot of
> it) and it would be great to offer data managers for it.
>
> Cheers,
> Bjoern
>
> Am 24.09.2014 um 22:05 schrieb David Hoover:
> > Hi,
> >
> > I am developing a tool for STAR (https://code.google.com/p/rna-star/),
> and I realize I may be reinventing another wheel.  Has anyone else created
> a tool for STAR?  There's nothing else in the toolsheds for it yet.
> >
> > David
> >
> > --------------------
> > David Hoover, PhD
> > Helix Systems Staff
> > SCB/DCSS/CIT/NIH
> > 301-435-2986
> > http://helix.nih.gov
> >
> >
> >
> >
> >
> > ___________________________________________________________
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