I installed clustalomega from the galaxy main toolshed using the admin
interface of our local galaxy install. When I run the tool, I get this

Dataset generation errors
        Dataset 55: co_alignment.fasta
                Tool execution generated the following error message:
                    Error invoking command:
clustalo --force --threads=1 --maxnumseq=300000 --maxseqlen=15000 -o
/opt/galaxy-dist/database/files/000/dataset_158.dat -l
/opt/galaxy-dist/database/files/000/dataset_159.dat -v -i

[Errno 2] No such file or directory

I've tried reloading my input file, reloading the tool's configuration,
resetting the metadata on the clustalomega repository, deleting the tool
completely and re-installing. No luck. If I try to rerun the job again, I
get non-sensical errors that seem to originate from other tools, as if the
database was completely garbled. Each of those tools work fine. Only
clustalomega behaves oddly.

I have no access to our galaxy server, so any solution would have to be
implemented from the admin interface.

thanks for any hints,


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