Hi folks,

Got a strange problem - it's hit me on all my self-install options today
including using the Chef cookbook as well as the galaxy mecurial install
method on Ubuntu 12.04 LTS

I'm trying to build a local galaxy that supports a few common extra
tools (things like samtools etc.)

I can boot a fresh Ubuntu 12.04 LTS and follow the instructions at

>   hg clone https://bitbucket.org/galaxy/galaxy-dist/
>   cd galaxy-dist
>   hg update stable
     sh ./run.sh

There are two strange things that don't quite match what I'm expecting
to see from the docs ...

(1)  The file "universe_wsgi.ini " no longer gets created in
galaxy-dist/  after running "run.sh" for the first time. This is strange
because I remember it working days ago but now on fresh server and fresh
checkout the file does not get created and I have to manually create one
in oder to set "host ="

(2) I can't even install simple tools like samtools from the standard
tool sheds. The status page gets stuck at "installing dependencies" and
if I navigate away I get a browser javascript error ("Initializing
repository installation failed"

Any tips or tricks appreciated, thanks!


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