Martin Čech wrote: > (2) There might have been some changes to the conf syntax regarding the > dependency directory etc. since the version of universe.wsgi.ini that > you are using. So please make sure you are using the current galaxy.ini > file and try installing a tool again. If it does not go well please > include the log of errors. >
Still seeing mysterious tool shed installation failures on brand new servers running the stable checkout. After changing to HTTPS in tool_sheds_conf.xml I made much more progress but for a few basic tools I get the web UI stuck on "installing dependencies", no obvious error output and a javascript error about the "initializing repository installation failed" when I navigate away. Screenshot showing what happens with samtools_0_1_18 attached. And the server logs don't show anything obvious going wrong: > 50.247.195.121 - - [07/Oct/2014:20:45:41 +0000] "POST > /admin_toolshed/prepare_for_install HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install?tool_shed_url=https://toolshed.g2.bx.psu.edu/&repository_ids=5a9571a9ebd4ce0a&changeset_revisions=171cd8bc208d"; > "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, > like Gecko) Chrome/37.0.2062.124 Safari/537.36" > tool_shed.util.tool_dependency_util DEBUG 2014-10-07 20:45:43,539 Updating an > existing record for version 0.1.18 of tool dependency samtools for revision > 171cd8bc208d of repository package_samtools_0_1_18 by updating the status > from Never installed to Installing. > tool_shed.galaxy_install.tool_dependencies.recipe.step_handler DEBUG > 2014-10-07 20:45:43,563 Attempting to download via url: > http://depot.galaxyproject.org/package/linux/x86_64/samtools/samtools-0.1.18-linux-x86_64.tgz > 50.247.195.121 - - [07/Oct/2014:20:45:45 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:45:48 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:45:51 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:45:54 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:45:57 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:46:00 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:46:03 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:46:06 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:46:09 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:46:13 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:46:16 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:46:19 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" > 50.247.195.121 - - [07/Oct/2014:20:46:22 +0000] "POST > /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 - > "http://54.165.218.123:8080/admin_toolshed/prepare_for_install"; "Mozilla/5.0 > (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/37.0.2062.124 Safari/537.36" I'm not sure I've got the proper debug output turned on but any tips or hints would be appreciated. Regards, Chris
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