Agreed. On Mon, Jan 12, 2015 at 10:24 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> Hi Ryan, > > That is the workaround I am using, which means > keeping an uncompressed copy of the FASTQ > file on our main storage from where Galaxy can > see it (for people to use within their histories). > > From a long term storage perspective this is not > ideal - so I am keen for better handling of gzipped > files within Galaxy (particularly within libraries > which we use for raw data). > > Peter > > On Mon, Jan 12, 2015 at 5:20 PM, Ryan G <ngsbioinformat...@gmail.com> > wrote: > > Yes, I'm doing a link to file on file system when doing a library import. > > Does this mean I should link to the the uncompressed file? > > > > On Mon, Jan 12, 2015 at 12:14 PM, Peter Cock <p.j.a.c...@googlemail.com> > > wrote: > >> > >> Ah. Then this is more subtle... are you using the > >> library import option where Galaxy just symlinks > >> to existing files? I thought that was not possible > >> with gzipped files (for the reasons given below). > >> Perhaps this is not being blocked, leading to the > >> confused state you're seeing? > >> > >> Peter > >> > >> On Mon, Jan 12, 2015 at 4:52 PM, Ryan G <ngsbioinformat...@gmail.com> > >> wrote: > >> > Galaxy is not decompressing the file. The file is linked to on the > >> > filesystem. > >> > >
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