I'm still having major issues with repo updates. 1) I'm getting this message for installing dependencies for package_samtools_1_1 that it says are missing:
Error installing tool dependency ncurses version 5.9: Unable to locate required tool shed repository named package_ncurses_5_9 owned by iuc with revision c0735727b530. Error installing tool dependency zlib version 1.2.8: Unable to locate required tool shed repository named package_zlib_1_2_8 owned by iuc with revision 03abe628fbe8.Installed tool dependencies: ncurses,zlib But I have these packages installed, which are the latest revisions. package_ncurses_5_9 iuc 5e1760c773ba package_zlib_1_2_8 iuc 63a4a902cda2 2) bam_to_sam has a red arrow icon indicating a newer installable revision is available, but when I check for updates it says: The installed repository named 'bam_to_sam' is current, there are no updates available. There are no newer entries for this on the Installed tool shed repositories page, just the one saying there is a newer revision. 3) Still getting: Found The resource was found at http://toolshed.g2.bx.psu.edu/repository/check_for_updates?galaxy_url=https://galaxy.hpc.qmul.ac.uk/&name=bam_to_sam&owner=devteam&changeset_revision=c09a20532957; you should be redirected automatically. For any repository when I click on "Get repository updates". I am not redirected automatically, clicking the link doesn't work, only pasting it into the browser bar. Help would be greatly appreciated, as I'm thinking something major has gone wrong and that I will have to reinstall galaxy. Many thanks Anna On 6 March 2015 at 16:50, Anna Terry <iseegl...@googlemail.com> wrote: > Hi, > I have a few installed tool shed repositories which are showing that > updates are available. When I click get repository updates, instead of the > usual upate page, I get a page that simply says > Found > > The resource was found at > http://toolshed.g2.bx.psu.edu/repository/check_for_updates?galaxy_url=https://galaxy.hpc.qmul.ac.uk/&name=bam_to_sam&owner=devteam&changeset_revision=250151b4d934; > you should be redirected automatically. > > > This is for bam_to_sam, but same problem for blast_datatypes, > pileup_interval and sam_to_bam too. > > Anyone have any ideas why I'm seeing this? > > Cheers > > Anna >
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