Hi Martin,  thanks for looking at this

On 27 March 2015 at 14:51, Martin Čech <mar...@bx.psu.edu> wrote:

>
>
> The requested revisions are from the Test Tool Shed, which means your
> package_samtools_1_1 is also installed from the Test Tool Shed. Please
> install only from the Main Tool Shed (https://toolshed.g2.bx.psu.edu)
> unless you want to test.
>
>

Great, thanks! It's now sorted.



>
>> 2)
>> bam_to_sam has a red arrow icon indicating a newer installable revision
>> is available, but when I check for updates it says:
>> The installed repository named 'bam_to_sam' is current, there are no
>> updates available.
>> There are no newer entries for this on the Installed tool shed
>> repositories page, just the one saying there is a newer revision.
>>
>> Which Tool Shed is the tool installed from and what revision do you have?
>
>

Tool shed: toolshed.g2.bx.psu.edu
Revision: c09a20532957



> 3)
>>
>> I think this has to do with your proxy configuration that is not
> following Tool Shed redirects properly.
>
>

Are you able to help me troubleshoot this?  Which bits of config files
would help?

Many thanks
Anna
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