On Mon, Mar 23, 2015 at 4:00 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > On Mon, Mar 23, 2015 at 1:41 PM, John Chilton <jmchil...@gmail.com> wrote: >> Hey Peter, >> >> Thanks for continuing to apply pressure on these issues. I have >> pushed some logging into Galaxy's development branch >> (https://github.com/galaxyproject/galaxy/commit/8cb06d7fc2913b4d83ca01b50d76e9607bbe379d) >> that should make that error more informative. I don't know when that >> will get pushed out to bitbucket and the shed retested - but once >> those two things happen we will hopefully have a better idea what the >> problem is (probably some subtle deployment problem - some >> incompatible version of samtools on the path? samtools on Galaxy's >> path but not the test script's path?). >> >> -John > > Lovely - I agree this seems the most likely cause, so fingers crossed. > > Thank you, > > Peter
Sadly this tool hasn't been tested since 2015-03-18 so we don't yet know what extra clues your debug logging will reveal... https://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_depad/ Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
