On Mon, Mar 23, 2015 at 4:00 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> On Mon, Mar 23, 2015 at 1:41 PM, John Chilton <jmchil...@gmail.com> wrote:
>> Hey Peter,
>>   Thanks for continuing to apply pressure on these issues. I have
>> pushed some logging into Galaxy's development branch
>> (https://github.com/galaxyproject/galaxy/commit/8cb06d7fc2913b4d83ca01b50d76e9607bbe379d)
>> that should make that error more informative. I don't know when that
>> will get pushed out to bitbucket and the shed retested - but once
>> those two things happen we will hopefully have a better idea what the
>> problem is (probably some subtle deployment problem - some
>> incompatible version of samtools on the path? samtools on Galaxy's
>> path but not the test script's path?).
>> -John
> Lovely - I agree this seems the most likely cause, so fingers crossed.
> Thank you,
> Peter

Sadly this tool hasn't been tested since 2015-03-18 so we don't
yet know what extra clues your debug logging will reveal...


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