Hi all,

An old question without reply. Is there a solution to this problem ?
Thanks for your help.

nico

Le 18/07/2014 12:51, Ulf Schaefer a écrit :
Hi all

We frequently use the syntax below to rename outputs of workflows that
we run in batch. It is convenient to have sample names from fastqs
carried over to sams, bams, vcfs, etc.

#{input1 | basename}.bam

This does not seem to be working for inputs that are in repeats, e.g.
the VelvetOptimiser. Does anybody know if there is a syntax to make this
work, maybe

#{repeatname[0].input1 | basename}.bam ?

Thanks a lot for your help
Ulf

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