Hi Ramon,

I'm sorry your' having problems with the htseq-count tool. Could you elaborate a bit on an error messages you see for the missing tool dependencies? You should be able to click on those repositories that show missing dependencies and see which ones are not properly installed and then clicking on those get to an error message.

I know there has been an issue with the freetype_2_4 package, at least for me, I am unable to download the file from sourceforge at the moment.

Also, there has been a bug that can cause some fairly tough to trace errors during installation that was recently patched: https://github.com/galaxyproject/galaxy/pull/403.

I've also copied this message to the galaxy-dev mailing list in case anyone there has additional insight.

- Lance
Garcia Escudero, Ramon <mailto:ramon.gar...@ciemat.es>
July 28, 2015 at 7:17 AM
Dear Lance,

I'm having problems installing "htseq-count wrapper for Galaxy" in my local galaxy from the Galaxy Toolshed at https://toolshed.g2.bx.psu.edu/repository?repository_id=2df7e24ce6c1f224

Main problems include missing tool dependencies for

package freetype
package imaging
package matplotlib

I'm runing ubuntu 14.04 LTS

Coul you help me with this problem?

Many thanks

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Lance Parsons - Scientific Programmer
134 Carl C. Icahn Laboratory
Lewis-Sigler Institute for Integrative Genomics
Princeton University

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