Il 04.08.2015 07:57 Hakeem Almabrazi ha scritto:
Hello everyone,

I was able to setup galaxy to work with our HPC cluster using the LSF
scheduler. So far so good except with few exceptions:


3. Finally, how do I control the resources (i.e cores for a job ) given
to a submitted job on Galaxy?

Hi Hakeem,
you need to specify new destinations in config/job_conf.xml, for example if you want to submit jobs asking for 4 cores on the same cluster node, use:

        <destination id="queue_name_4t" runner="drmaa">
<param id="nativeSpecification">-q queue_name -n 4 -R "span[hosts=1]"</param>

Then in the <tools> section of config/job_conf.xml add

        <tool id="tool_id" destination="queue_name_4t"/>

for each tool that should use 4 cores.

More info at:


Connetti gratis il mondo con la nuova indoona: hai la chat, le chiamate, le video chiamate e persino le chiamate di gruppo.
E chiami gratis anche i numeri fissi e mobili nel mondo!
Scarica subito l’app Vai su

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to