Thank you Nicola,
I will play with these options and see how it works.
Have you played with LSF and Galaxy setup?
From: Nicola Soranzo [mailto:nsora...@tiscali.it]
Sent: Tuesday, August 04, 2015 2:23 PM
To: Hakeem Almabrazi
Subject: Re: [galaxy-dev] LSF cluster wierd behaviours!
Il 04.08.2015 07:57 Hakeem Almabrazi ha scritto:
> Hello everyone,
> I was able to setup galaxy to work with our HPC cluster using the LSF
> scheduler. So far so good except with few exceptions:
> 3. Finally, how do I control the resources (i.e cores for a job )
> given to a submitted job on Galaxy?
you need to specify new destinations in config/job_conf.xml, for example if you
want to submit jobs asking for 4 cores on the same cluster node, use:
<destination id="queue_name_4t" runner="drmaa">
<param id="nativeSpecification">-q queue_name -n 4 -R
Then in the <tools> section of config/job_conf.xml add
<tool id="tool_id" destination="queue_name_4t"/>
for each tool that should use 4 cores.
More info at:
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