I wrote an extension that will help planemo pull in tool dependencies.
It is for when the dependency was installed into galaxy but where planemo is
not using the database to find that tool.
It works my helping planemo guess where the tool dependency may be.
Hope that helps.
University of Manchester
From: galaxy-dev [galaxy-dev-boun...@lists.galaxyproject.org] on behalf of
Steve Cassidy [steve.cass...@mq.edu.au]
Sent: Thursday, September 03, 2015 9:00 AM
Subject: [galaxy-dev] planemo and tool dependencies
I'm trying to test some tools under planemo and can't find out how to have it
install tool dependencies while setting up the environment.
The dependency is on a particular python module and we have a
tool_dependencies.xml file to describe it. I can't see a way to tell planemo
serve etc to refer to that file to get the dependencies.
Any help appreciated.
Department of Computing, Macquarie University
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