I wrote an extension that will help planemo pull in tool dependencies.


It is for when the dependency was installed into galaxy but where planemo is 
not using the database to find that tool.

It works my helping planemo guess where the tool dependency may be.

Hope that helps.
University of Manchester
From: galaxy-dev [galaxy-dev-boun...@lists.galaxyproject.org] on behalf of 
Steve Cassidy [steve.cass...@mq.edu.au]
Sent: Thursday, September 03, 2015 9:00 AM
To: galaxy-dev@lists.galaxyproject.org
Subject: [galaxy-dev] planemo and tool dependencies

Hi all,
  I'm trying to test some tools under planemo and can't find out how to have it 
install tool dependencies while setting up the environment.

The dependency is on a particular python module and we have a 
tool_dependencies.xml file to describe it. I can't see a way to tell planemo 
serve etc to refer to that file to get the dependencies.

Any help appreciated.


Department of Computing, Macquarie University
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to