HI,
well in case anyone come across a similar problem. I finally found out that
it wasnt a blast specific issue but a general thing. This is I could not
visualize any data, even the one i uploaded, but this didnt happen and
could see everything if i had the module x_accel_redirect disable.
After a while found that this issue was easily solve just adding a "listen
80;" under the nginx configuration.
Now it looks something like this:
server {
client_max_body_size 10G;
listen 80;
server_name localhost;
#charset koi8-r;
#access_log logs/host.access.log main;
...............
Didnt check how to solve this issue with the equivalent Apache2 xsendfile.
Just wonder if this should be added to the
https://wiki.galaxyproject.org/Admin/Config/nginxProxy page.
Regards
jc
On Tue, Oct 13, 2015 at 3:01 PM, Juan Carlos <jcsanch...@gmail.com> wrote:
>
>
> Hi all,
> doing some more test realized that when leave "sanitize_all_html = False"
> i cant actually see any html result. So really thinking is something to do
> with the apache2 settings.
> I followed all the step at
> https://wiki.galaxyproject.org/Admin/Config/ApacheProxy?action=show&redirect=Admin%2FConfig%2FApache+Proxy
> but maybe didnt take into account something else.
> Anyone has any idea to help?
>
> thanks!
> jc
>
>
>
>
> On Fri, Oct 9, 2015 at 12:24 PM, Juan Carlos <jcsanch...@gmail.com> wrote:
>
>> Hi Peter,
>>
>> Just checked it and the HTML output from BLAST+ seems ok.
>> As you said I also think is related to some issue with the security of
>> Galaxy. Everywhere i checked they only mention the sanitize parameter, dont
>> know what else could be, even thinking if it could be something in the
>> apache2 configuration
>> so still trying to find out
>>
>> thanks
>>
>> On Thu, Oct 8, 2015 at 7:04 PM, Peter Cock <p.j.a.c...@googlemail.com>
>> wrote:
>>
>>> Hi Juan,
>>>
>>> It does sounds like something in Galaxy's HTML security
>>> code could be to blame...
>>>
>>> Do you have any other HTML producing tools installed?
>>> It would be useful to see how their output behaves. e.g.
>>> The BLAST+ tools offer (very simple ugly) HTML output
>>> directly.
>>>
>>> Peter
>>>
>>> On Thu, Oct 8, 2015 at 7:54 AM, Juan Carlos <jcsanch...@gmail.com>
>>> wrote:
>>> >
>>> > Hi,
>>> >
>>> > I'm new to galaxy and trying to set up a local blast tool, and maybe
>>> this is
>>> > due to a silly mistake
>>> > So far so good all is working but when trying to use blast2html i just
>>> get a
>>> > "blank" page (even if the html is being generated), this happens when
>>> using
>>> > the recommended setting in the configuration file
>>> > "sanitize_all_html = False"
>>> >
>>> > Tried with "sanitize_all_html = True" and was able to see the results
>>> but
>>> > with the message of the results being stripped.....to be sure that at
>>> least
>>> > was working
>>> >
>>> > Thanks for any help!!
>>> > jc
>>> >
>>> > ___________________________________________________________
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>>>
>>
>>
>
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