Hi Björn! I do have signalP 3 , it's installed and on the path.
The tests files are the ones from the archive (no changes nor I tried to open it manually) The exact lines in the prompt are: $SIGNALP Signalp -G -t euk test/test.seq Gawk: fatal: cannot open file 'test/test.seq' for reading (no such file or directory) Signal: ERROR in sequence file(s), check syntax In galaxy report : Fatal error : exit code 127 () /bin/sh: 1 : signal: not found One or more tasks failed, e.g. 127 from 'signalp -short -t euk <path/galaxy/database/tmp/tmpxxxx/signal.0.tmp > <path/galaxy/database/tmp/tmpxxxx/signal.0.tmp.out' gave: That's all. Thank you for your help again . Olivier. -----Message d'origine----- De : Björn Grüning [mailto:bjoern.gruen...@gmail.com] Envoyé : jeudi 12 novembre 2015 12:48 À : Olivier CLAUDE <o.cla...@outlook.fr> Cc : 'galaxy-dev' <galaxy-...@lists.bx.psu.edu> Objet : Re: [galaxy-dev] Tmhmm and signal P Hi Olivier, you need to have signalp in version 3. You have installed it already and it is now on your $PATH? > Signal P: with v3.0: it can’t localize it (signal not found) (I can’t > even launch it in command line) What is the error if you run it on command line? Ciao, Bjoern > > With v4.1 it can’t be reached by galaxy (I am thinking > about something with the name 3.0 vs 4.1 but I can’t figure where I > have to change …) > > > > > > Do anybody have an idea? > > > > Regards, > > > > > > M Olivier CLAUDE- PhD Student > > INSERM/UPMC UMRS ICAN 1166 – Equipe 2 > > Faculté de médecine Pitié-Salpêtrière > > 91, bld de l'Hôpital - 3ème étage - Porte 305 > > 75013 Paris > > > > > > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this and other > Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/