On Thu, Nov 12, 2015 at 4:24 PM, Olivier CLAUDE <[email protected]> wrote: > I followed the instuctions given by peter and signalp works with galaxy! > Thanks a lot! > Do I try the same for tmhmm2 and promoter2? > Thanks a lot again! > > Olivier
Our notes from installing tmhmm2: TMHMM arrives as the compressed file tmhmm-2.0c.Linux.tar.gz which can be uncompressed in the usual way $ tar -zxvf tmhmm-2.0c.Linux.tar.gz We also move this to /usr/opt/timhmm-2.0c for consistency with SIGNALP, and create the link in /usr/local/bin: $ sudo cp -R tmhmm-2.0c/ /usr/opt $ sudo ln -s /usr/opt/tmhmm-2.0c/bin/tmhmm /usr/local/bin/ We needed to modify the main TMHMM script and tmhmmformat.pl to point it at the right Perl on the system, replace the first line: #!/usr/local/bin/perl with: #!/usr/bin/env perl Also at about line 17, set the path to match what you've used: $opt_basedir = '/usr/opt/tmhmm-2.0c'; You can change the defaults in this script too, but the Galaxy wrapper should not mind. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
