The list of tools installed on usegalaxy.org is conviniently desposited
here:
https://github.com/galaxyproject/usegalaxy-playbook/blob/master/files/galaxy/usegalaxy.org/tool_list.yaml

Normally you should be able to use this command outlined above to get all
the tools that usegalaxy.org has,
including the dependencies.

PS. please keep all traffic on the mailing list

On 4 March 2016 at 19:59, Marius van den Beek <m.vandenb...@gmail.com>
wrote:

> There is no real step by step guide, but the script itself has a help text:
>
> $ python install_tool_shed_tools.py -h
>
> Also make sure you have bioblend installed (pip install bioblend)
> It does more things than just installing tools. To just install tools you
> would use a command line like this:
>
>
> python install_tool_shed_tools.py -a "your new admin api key" -g "your new 
> galaxy instance url" -t tool_list.yml
>
> tool_list.yml follows the format outlined here:
>
> https://github.com/galaxyproject/ansible-galaxy-tools/blob/master/files/tool_list.yaml.sample
>
> Cheers,
> Marius
> ​
>
> On 4 March 2016 at 19:11, William Ge <w...@centrilliontech.com> wrote:
>
>> Thank you both, Marius and Dannon!
>>
>> Since I am not familiar with ansible, I will just run the python script.
>> I am reading about the usage of the script, trying to figure out what
>> configuration needs  to be in place and what options to use. Is there  a
>> step-by-step guide for using this script somewhere?
>>
>>
>> Best regards,
>> Bill
>>
>> ------------------------------
>> *From:* Marius van den Beek <m.vandenb...@gmail.com>
>> *Sent:* Friday, March 4, 2016 7:25 AM
>> *To:* Dannon Baker
>> *Cc:* William Ge; galaxy-dev@lists.galaxyproject.org
>> *Subject:* Re: [galaxy-dev] ERROR: PIP is not a legl parament of an
>> Ansible Play
>>
>> Hi Bill,
>>
>> I think you're trying to use the ansible-galaxy-tools role as a playbook:
>> This won't work, you can only include the role in your playbook,
>> or use this playbook https://github.com/afgane/galaxy-tools-playbook
>> <https://github.com/afgane/galaxy-tools-playbook>
>> afgane/galaxy-tools-playbook · GitHub
>> <https://github.com/afgane/galaxy-tools-playbook>
>> github.com
>> README.md A ready-to-use Ansible playbook for the Galaxy Tools role.
>> Before you can use this playbook, you need to install Ansible: $ pip
>> install ansible
>> You can also directly use the python script in
>> https://github.com/galaxyproject/ansible-galaxy-tools/blob/master/files/install_tool_shed_tools.py
>> if you're more comfortable not using ansible.
>>
>> Cheers,
>> Marius
>>
>> On 4 March 2016 at 13:43, Dannon Baker <dannon.ba...@gmail.com> wrote:
>>
>>> I haven't seen this before but did a little googling.  What version is
>>> your ansible installation?   If it's a little bit older, (
>>> https://github.com/ansible/ansible/issues/5412) might be what you're
>>> seeing.
>>>
>>> It's a bit of a long read, but it looks like reinstalling or updating
>>> your ansible (or installing a new one in a fresh virtualenv for isolation)
>>> should resolve it.
>>>
>>> Let me know if that doesn't fix it up for you.
>>>
>>> On Thu, Mar 3, 2016 at 10:08 PM, William Ge <w...@centrilliontech.com>
>>> wrote:
>>>
>>>> Hi, all,
>>>>
>>>>
>>>>
>>>> Sorry to bother you again. I am trying to install tools using the
>>>> script. I have downloaded the playbook, but stuck here:
>>>>
>>>>
>>>>
>>>> [galaxy@Pegasus ansible-galaxy-tools]$ ansible-playbook
>>>> tasks/tools.yml -i "localhost," --extra-vars galaxy_tools_api_key=xcd2Glx
>>>>
>>>> ERROR: pip is not a legal parameter of an Ansible Play
>>>>
>>>>
>>>>
>>>> I did not find anything related on the Galaxy search either. Any help
>>>> will be appreciated.
>>>>
>>>>
>>>>
>>>> The web Admin interface only allows tool installation one by one. I
>>>> wish it allows batch installation there.
>>>>
>>>>
>>>>
>>>> Thanks,
>>>>
>>>> Bill
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> ___________________________________________________________
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>>>>
>>>
>>>
>>> ___________________________________________________________
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>>>
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>>>
>>
>>
>
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