The location of that dir is defined in shed_tool_conf.xml[.sample] and
defaults to ../shed_tools. The reasoning is described here, under item #2:
https://wiki.galaxyproject.org/DevNewsBriefs/2012_10_23#Tool_Shed

On Thu, Apr 7, 2016 at 11:09 AM, William Ge <w...@centrilliontech.com> wrote:

> Thanks, Enis!
>
> Yes, that line was uncommented with the option pointing to
> “tool_conf.xml,shed_tool_conf.xml”. However, I noticed that the
> “shed_tool_conf.xml” has not been changed after running the
> ansible-playbook to install tools. One other thing: the shed_tools
> directory was one level above the Galaxy subdirectories: i.e., all
> subdirectories (config, database, tool-data, tools, static, etc) are in
> /home/galaxy/galaxy, while “shed_tools” is in /home/galaxy. Do not know why.
>
>
>
> Thanks,
>
> Bill
>
>
>
> *From:* Enis Afgan [mailto:enis.af...@irb.hr]
> *Sent:* Thursday, April 7, 2016 7:06 AM
> *To:* William Ge <w...@centrilliontech.com>
> *Cc:* Marius van den Beek <m.vandenb...@gmail.com>;
> galaxy-dev@lists.galaxyproject.org
>
> *Subject:* Re: [galaxy-dev] ERROR: PIP is not a legl parament of an
> Ansible Play
>
>
>
> Hi Bill,
>
> Do you have the value set in Galaxy's *$GALAXY_ROOT/config/galaxy.ini*
> file for setting *tool_config_file *option? I believe this variable
> should be set to a file other than the default **.sample*.
>
>
>
> On Wed, Apr 6, 2016 at 9:21 PM, William Ge <w...@centrilliontech.com>
> wrote:
>
> Hi, Marius,
>
>
>
> I got ansible running and installed the tools on my local instance of
> Galaxy. However, the tools are not shown on the tool panel on the web page.
> Wonder if the tools has been installed in the wrong place, or something
> else is wrong. Have been searching the Wiki and list without any resulst.
> Please point me to the right directions.
>
>
>
> Thanks,
>
> Bill
>
>
>
> *From:* Marius van den Beek [mailto:m.vandenb...@gmail.com]
> *Sent:* Friday, March 4, 2016 12:27 PM
> *To:* William Ge <w...@centrilliontech.com>
> *Cc:* Dannon Baker <dannon.ba...@gmail.com>;
> galaxy-dev@lists.galaxyproject.org
> *Subject:* Re: [galaxy-dev] ERROR: PIP is not a legl parament of an
> Ansible Play
>
>
>
> On 4 March 2016 at 20:47, William Ge <w...@centrilliontech.com> wrote:
>
> Thanks a lot, Marius!
>
> Sure, you're welcome!
>
>
>
> I am a newbie to this complex system and want a quick clone/install
> locally. I have spent over two weeks on the process. There are many
> configuration files and environment variables or dependencies to sort out.
> I wish the sample configuration files would include most of the options so
> that new installation just needs to comment out or delete unwanted ones.
>
>
>
> The galaxy team definitely aims for this, and usually you should (tm) be
> able to clone galaxy and use run.sh to get going.
>
> If you can tell us the steps where you were struggling we can try to
> update or clarify the documentation (A lot of it is on the wiki).
>
> Anyway, here is the error I got:
>
> [galaxy@Pegasus ansible-galaxy-tools]$ python
> files/install_tool_shed_tools.py -h
> Traceback (most recent call last):
>   File "files/install_tool_shed_tools.py", line 49, in <module>
>     logging.captureWarnings(True)  # Capture HTTPS warngings from urllib3
> AttributeError: 'module' object has no attribute 'captureWarnings'
>
>
>
> If I run this after activating the galaxy_env and install ensible,
> bioblend, argparse and importlib, the same error came up. I guess this is
> Python 2.6 issue. Any solutions known?
>
>
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