I'm hoping you can help out with a problem we are experiencing uploading files 
to our own Galaxy instance.

When a user tries to upload a file to Galaxy through their web browser, the job 
errors out:

Traceback (most recent call last):
  File "/gpfs/fs1/sfw/cibem_galaxy/app/galaxy/tools/data_source/upload.py", 
line 430, in <module>
  File "/gpfs/fs1/sfw/cibem_galaxy/app/galaxy/tools/data_source/upload.py", 
line 407, in __main__
    for line in open( sys.argv[3], 'r' ):
IOError: [Errno 13] Permission denied: 

The permissions on the referenced file:
-rw-------+ 1 rlemley      rlemley      317 Mar  7 13:42 tmpSlG2pC

As the Galaxy daemons run as XXXXXX_galaxy, it does not have permission to read 
the file.

I tried modifying external_chown_script.py so that XXXXXX_galaxy has permission 
to read that file, but that caused problems elsewhere so I backed out the 

Any suggestions?

Many thanks,


Rob Lemley
Systems Administrator - CIRC
University of Rochester

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