Thanks Peter, that's really helpful. I'm glad we're not the only ones running into this.
-Rob Rob Lemley Systems Administrator – CIRC University of Rochester -----Original Message----- From: Peter Cock [mailto:p.j.a.c...@googlemail.com] Sent: Tuesday, March 15, 2016 10:34 AM To: John Chilton <jmchil...@gmail.com> Cc: Lemley, Rob <rob.lem...@rochester.edu>; email@example.com Subject: Re: [galaxy-dev] Problems uploading files to galaxy On Tue, Mar 15, 2016 at 2:21 PM, John Chilton <jmchil...@gmail.com> wrote: > If you are running jobs as "the real user" with drmaa (using the chown > script) - you will probably want to setup a separate job destination > using the local runner for upload jobs. The upload tool uses files > that are created outside of Galaxy and these aren't modeled well. > > Does this help? > > -John We found the opposite - if using "the real user", the Galaxy v16.01 would do a chown on the datafiles for DRMAA jobs (good) but also for local jobs (bad): https://urldefense.proofpoint.com/v2/url?u=http-3A__dev.list.galaxyproject.org_external-2Dchown-2Dscript-2Dpy-2Dand-2Dthe-2Dlocal-2Djob-2Drunner-2Dtt4668738.html&d=BQIBaQ&c=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU&r=d-Zn2Sbc-XheRlOYkSFXPupZ8ZmuYq52isQBiI3MBWA&m=rMI9zRSmgepuzJAMtXaa8aFFhpcuYbKx2r_h3aC6wIg&s=IZ8BQgQLJhvOnBc_xzGzMYMVVETGgFUhcBM_tNlMXRE&e= I will reply on that thread now with an update... Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/