Hi folks,
I have make somes alterations on my tools to adjust of according with best
pratices of development of tools presented in [1] [2]. The repository of
tools was changed for [3].
I was testing the tool of docking [4] with the command planemo t, but as
the algorithm used is heuristic, the output files not have the same content
that as output files example and planemo tests fails. Any suggestion to
solve this problem?

[1]
https://galaxy-iuc-standards.readthedocs.org/en/latest/best_practices.html
[2] https://planemo.readthedocs.org/en/latest/
[3] https://github.com/leobiscassi/autodock_vina_tools
[4]
https://github.com/leobiscassi/autodock_vina_tools/tree/docking/tools/docking

Att.

On Sat, Jan 30, 2016 at 3:44 PM Léo Biscassi <leo.bisca...@gmail.com> wrote:

> Hi Bjorn, the branch model of ChemicalToolBoX is the same presented in
> [1]? Could guide me about it?
>
> [1] https://github.com/galaxyproject/galaxy/blob/dev/CONTRIBUTING.md
>
> Att.
>
> On Mon, Dec 28, 2015 at 5:04 PM Léo Biscassi <leo.bisca...@gmail.com>
> wrote:
>
>> Ok, thanks!
>>
>> Best regards,
>>
>> On Mon, Dec 28, 2015 at 5:36 PM Björn Grüning <bjoern.gruen...@gmail.com>
>> wrote:
>>
>>>
>>>
>>> Am 28.12.2015 um 20:33 schrieb Léo Biscassi:
>>> > Hi,
>>> > Thanks all your attention.
>>> > Although my project is functional prototype, its current version is
>>> able to
>>> > integrate with projects. In fact, I was looking for projects like
>>> > ChemicalToolBoX because I would like to develop my tools under project
>>> that
>>> > has more options. In this way, ChemicalToolBoX is a great opportunity
>>> for
>>> > me.
>>> > Can you update the trello card with my project? Is it necessary for
>>> your
>>> > organization?
>>>
>>> I added you :) So you have all right to modify cards.
>>> Let me know if you need help with Tool development or git.
>>>
>>> This is exciting!
>>> Cheers,
>>> Bjoern
>>>
>>> > Best regards,
>>> >
>>> > On Mon, Dec 28, 2015 at 5:12 PM Björn Grüning <
>>> bjoern.gruen...@gmail.com>
>>> > wrote:
>>> >
>>> >>
>>> >>
>>> >> Am 28.12.2015 um 20:06 schrieb Léo Biscassi:
>>> >>> Hi,
>>> >>>
>>> >>> I've found this Trello card (
>>> >>> https://trello.com/c/2eIu6SBa/49-autodock-integration). Do you have
>>> more
>>> >>> information about it?
>>> >>
>>> >> Afaik we can not use his work as it was done for some company and he
>>> >> moved on ... so this is unfortunately no option afaik.
>>> >>
>>> >>
>>> >>
>>> >>> best,
>>> >>>
>>> >>> On Mon, Dec 28, 2015 at 4:33 PM Björn Grüning <
>>> bjoern.gruen...@gmail.com
>>> >>>
>>> >>> wrote:
>>> >>>
>>> >>>> Hi,
>>> >>>>
>>> >>>> yes we had some idea, but nothing materialised so far. We started
>>> with
>>> >>>> the visualisation, because this was more fun :)
>>> >>>>
>>> >>>> Have a look at this board for more ideas:
>>> >>>> https://trello.com/b/t9Wr8lSY/chemicaltoolbox
>>> >>>>
>>> >>>> Ciao,
>>> >>>> Bjoern
>>> >>>>
>>> >>>>
>>> >>>> Am 28.12.2015 um 19:29 schrieb Léo Biscassi:
>>> >>>>> Hi Bjorn, thanks for reply.
>>> >>>>> Would be great idea join forces in this project. How do you plan
>>> extend
>>> >>>>> ChemicalToolBoX with docking? I would like to know more details.
>>> >>>>>
>>> >>>>> Att.
>>> >>>>>
>>> >>>>> On Mon, Dec 28, 2015 at 4:09 PM Björn Grüning <
>>> >> bjoern.gruen...@gmail.com
>>> >>>>>
>>> >>>>> wrote:
>>> >>>>>
>>> >>>>>> Hi Léo,
>>> >>>>>>
>>> >>>>>> idneed we have a small community that is bringing Cheminformatics
>>> into
>>> >>>>>> the Galaxy. It's called ChemicalToolBox and is located here:
>>> >>>>>>
>>> >>>>>>
>>> https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox
>>> >>>>>>
>>> >>>>>> We have all the basic stuff for manipulating checmical structure
>>> >> files,
>>> >>>>>> fingerprint search, pharmacophore searches and so on. Also we did
>>> all
>>> >>>>>> the basic work on datatypes and packages. Our last addition was to
>>> >>>>>> integrate a PDB visulalisation (NGL) based on WebGL. This one is
>>> used
>>> >> to
>>> >>>>>> visualise our structures directly in Galaxy.
>>> >>>>>>
>>> >>>>>> We have also a trello board with more ideas and plans what we
>>> would
>>> >> like
>>> >>>>>> to add and Vina is one of the ig targets :)
>>> >>>>>> Would be great if we can join forces here!
>>> >>>>>>
>>> >>>>>> We also maintain a Galaxy Flavour (Galaxy Docker Image about
>>> >>>>>> Cheminformatics) that we would love to extend with Docking.
>>> >>>>>>
>>> >>>>>> Thanks for letting us know and looking forward to join forces
>>> here!
>>> >>>>>> Bjoern
>>> >>>>>>
>>> >>>>>>
>>> >>>>>> Am 28.12.2015 um 18:58 schrieb Léo Biscassi:
>>> >>>>>>> Hi folks,
>>> >>>>>>>
>>> >>>>>>> I've been developing Galaxy tools for docking protein-compounds.
>>> My
>>> >>>>>> docking
>>> >>>>>>> program is Autodock Vina. In [1] is my repository.
>>> >>>>>>>
>>> >>>>>>> I'm writing here for two purpose:
>>> >>>>>>> 1) Is there someone working in this way? I've found the project
>>> [2].
>>> >>>>>>> 2) I would like to share these tools to Galaxy project. Are they
>>> >>>> welcome
>>> >>>>>>> for Galaxy project?  Let me know the best practices for
>>> developing
>>> >>>> tools
>>> >>>>>> to
>>> >>>>>>> be shared in Galaxy project.
>>> >>>>>>>
>>> >>>>>>> [1] https://github.com/leobiscassi/galaxy_tools
>>> >>>>>>> [2] https://toolshed.g2.bx.psu.edu/
>>> >>>>>>>
>>> >>>>>>> Thanks for any help.
>>> >>>>>>>
>>> >>>>>>> Att.
>>> >>>>>>>
>>> >>>>>>>
>>> >>>>>>>
>>> >>>>>>> ___________________________________________________________
>>> >>>>>>> Please keep all replies on the list by using "reply all"
>>> >>>>>>> in your mail client.  To manage your subscriptions to this
>>> >>>>>>> and other Galaxy lists, please use the interface at:
>>> >>>>>>>   https://lists.galaxyproject.org/
>>> >>>>>>>
>>> >>>>>>> To search Galaxy mailing lists use the unified search at:
>>> >>>>>>>   http://galaxyproject.org/search/mailinglists/
>>> >>>>>>>
>>> >>>>>>
>>> >>>>
>>> >>
>>>
>> --
>> *Léo Biscassi*
>> Facebook - https://pt-br.facebook.com/lbiscassi
>> Linkedin - https://br.linkedin.com/in/leobiscassi
>> Skype - biscassi.leo
>> Twitter - https://twitter.com/leobiscassi
>>
> --
> *Léo Biscassi*
> Facebook - https://pt-br.facebook.com/lbiscassi
> Linkedin - https://br.linkedin.com/in/leobiscassi
> Skype - biscassi.leo
> Twitter - https://twitter.com/leobiscassi
>
-- 
*Léo Biscassi*
Facebook - https://pt-br.facebook.com/lbiscassi
Linkedin - https://br.linkedin.com/in/leobiscassi
Skype - biscassi.leo
Twitter - https://twitter.com/leobiscassi
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