What kind of database backend are you using (postgres, myql, or the
default sqlite)?

If you are running many jobs - I would definitely encourage using postgres.

-John

On Sun, Mar 13, 2016 at 2:48 PM, Zuzanna K. Filutowska
<plat...@man.poznan.pl> wrote:
> Dear All,
>
> I am running newest version of Galaxy with PBS and I am observing
> strange behaviour: some jobs that were finished on the queue system are
> still shown as running on Galaxy Web interface. Communication with PBS
> server seems to work fine all the time. Nothing interesting seems to be
> in logs despite debug being on:
> sqlalchemy.pool.QueuePool ERROR 2016-03-13 11:36:02,544 Error closing
> cursor
> Any ideas, what can be a problem?
>
> --
>
> Pozdrawiam,
>
> --
> Zuzanna K. Filutowska, HPC Systems Administrator
> Poznan Supercomputing and Networking Center
> Institute of Bioorganic Chemistry Polish Academy of Sciences
> Seize the day boys! Make your lifes extraordinary! --John Keating
>
>
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