can you pleae check if you have samtools installed in your PATH?
Am 22.03.2016 um 19:28 schrieb Amelia Ireland:
> I'm setting up a Galaxy instance on a new server and am having some
> issues with BAM file uploads. I'm using the BAM files supplied with
> JBrowse for testing purposes. I have Galaxy installed on my laptop and
> file uploads are working fine, so it's evidently an issue with the
> server and/or OS configuration.
> Attempting to upload a BAM file returns the message
> "The uploaded binary file contains inappropriate content"
> and the upload is empty.
> The server is running Scientific Linux and uses the Environment Modules
> system for dependency management. I can successfully upload bed and
> bigwig files, which suggests that samtools is being loaded and
> functioning correctly.
> If someone can suggest some troubleshooting steps, I would be most grateful.
> Integrated Microbial Genomics (IMG)
> JGI / LBL
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