On 23 Mar 2016 00:41, "Hans-Rudolf Hotz" <h...@fmi.ch> wrote:
> Hi Amelia
> Does this happen with "Auto-detect" or do you pre-set the data type to
> 'bam' ?
> Regards, Hans-Rudolf
> On 03/22/2016 07:28 PM, Amelia Ireland wrote:
>> I'm setting up a Galaxy instance on a new server and am having some
>> issues with BAM file uploads. I'm using the BAM files supplied with
>> JBrowse for testing purposes. I have Galaxy installed on my laptop and
>> file uploads are working fine, so it's evidently an issue with the
>> server and/or OS configuration.
>> Attempting to upload a BAM file returns the message
>> "The uploaded binary file contains inappropriate content"
>> and the upload is empty.
>> The server is running Scientific Linux and uses the Environment Modules
>> system for dependency management. I can successfully upload bed and
>> bigwig files, which suggests that samtools is being loaded and
>> functioning correctly.
>> If someone can suggest some troubleshooting steps, I would be most
>> Integrated Microbial Genomics (IMG)
>> JGI / LBL
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Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: