Hi Björn, Your suggestion did not work, or at least I couldn’t get it to work. However, it seems the easiest solution is to simply provide my own default_notebook.ipynb file that uses my kernel when building the Docker image.
I should have something stable, and not too embarrassing, to share with the world in early June. Cheers, Keith > On May 9, 2016, at 2:19 AM, Björn Grüning <bjoern.gruen...@gmail.com> wrote: > > Hi Keith, > > please try this: > > c.MappingKernelManager.default_kernel_name = > 'your_kerne_name...maybe_groovy' > > in ipython_notebook_config.py > > completely untested. I would be happy to include the groovy stuff in the > main image :) > > Thanks, > Bjoern > > > Am 09.05.2016 um 01:20 schrieb Suderman Keith: >> How do I make my custom kernel the default when starting a Jupyter >> interactive environment? >> >> I have written a native Jupyter kernel for Groovy, that is, a Jupyter kernel >> written in Groovy that listens to, and responds on, the appropriate ZMQ >> sockets. I have also extended the bgruening/docker-jupyter-notebook docker >> image to add my kernel and modified the jupyter.ini file to use my Docker >> image. >> >> This all works. >> >> I can launch a Jupyter Notebook (or use 'jupyter console --kernel groovy' >> from the command line) and interact with Galaxy. I can launch an >> interactive Jupyter environment in Galaxy and select 'Kernels -> Change >> kernel -> Groovy' and all of the above works fine; I just want my kernel to >> be the default. >> >> ------------------------------ >> Research Associate >> Department of Computer Science >> Vassar College >> Poughkeepsie, NY >> >> >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ >> ------------------------------ Research Associate Department of Computer Science Vassar College Poughkeepsie, NY
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___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
