Hi Ray,

Sorry I missed this mail.
On 23. juni 2016 10:27, Raymond Wan wrote:
> Dear all,
>
> I'm trying to run the JBrowse tool within Galaxy.  The installation
> was fine (I think), but when I run the tool, I get this error:
>
>
> Fatal error: Exit code 1 () Traceback (most recent call last): File
> "/d15/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/d022577ff9cf/jbrowse/jbrowse.py",
> line 11, in <module> from Bio.Data import CodonTable ImportError: No
> module named
This sounds like it means you're missing the biopython dependency.

You should check if it installed correctly in the admin interface.
>
>
> Does this mean I'm missing something?
>
> In the history, if I click the "(i)" icon for the incomplete job (in
> red), everything looks fine, except that it says:
>
> Tool Version:  python: can't open file 'jbrowse.py': [Errno 2] No such
> file or directory
The version command is misbehaving, safe to ignore.
>
> However, "jbrowse.py" does exist in the path above.  Any idea what
> could be wrong?
>
> Thank you!
>
> Ray
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-- 
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, Biochemistry & Biophysics
Texas A&M University
College Station, TX 77843
e...@tamu.edu <mailto:e...@tamu.edu>
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