I did see that if I click each individual tool, and then in the options, I
could find the tool xml file, but this would require manually clicking each
of it. Is there any way we could get these in batch? I shouldn't be the
first or last person that want to make an identical clone of main galaxy
instance, so I assume that there are some good/easy ways I'm missing?


On Sun, Sep 25, 2016 at 1:05 AM, Beginner TI <ruiwang...@gmail.com> wrote:

> Hi All,
> I compiled samtools from source, and just realized that I don't have those
> tool xml files. Tried to google but failed to find any samtools wrapper.
> This is quite surprising since the main instance has it. Does anyone happen
> to know where we could obtain those files that are used by galaxy main
> instance? I don't want to use tool_shed and prefer to install all tools
> manually. In that case, how could I access the tool xml files that are used
> by tool_shed installation process?
> Thanks,
> Rui
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