Hi Rui,

you can install the following suite which includes about a dozen of wrapped
samtools.

https://toolshed.g2.bx.psu.edu/view/devteam/suite_samtools_1_2/5b673ccc8747

Martin

On Mon, Sep 26, 2016 at 11:05 AM Beginner TI <ruiwang...@gmail.com> wrote:

> I did see that if I click each individual tool, and then in the options, I
> could find the tool xml file, but this would require manually clicking each
> of it. Is there any way we could get these in batch? I shouldn't be the
> first or last person that want to make an identical clone of main galaxy
> instance, so I assume that there are some good/easy ways I'm missing?
>
> thanks,
> Rui
>
> On Sun, Sep 25, 2016 at 1:05 AM, Beginner TI <ruiwang...@gmail.com> wrote:
>
>> Hi All,
>>
>> I compiled samtools from source, and just realized that I don't have
>> those tool xml files. Tried to google but failed to find any samtools
>> wrapper. This is quite surprising since the main instance has it. Does
>> anyone happen to know where we could obtain those files that are used by
>> galaxy main instance? I don't want to use tool_shed and prefer to install
>> all tools manually. In that case, how could I access the tool xml files
>> that are used by tool_shed installation process?
>>
>> Thanks,
>> Rui
>>
>
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