I found the solution :

<param name="input" type="data" format="bam" label="Bam file"/>

<param name="dbindel" type="select" force_select="true" label="indel database">
         <options from_data_table="dbindel">
                <filter type="data_meta" ref="input" key="dbkey" column="1"/>
        </options>
</param>

Le 04/11/2016 à 13:50, Vincent Cahais a écrit :

Sure, my combo-box is correctly filled with all options, but unfiltered.

<table comment_char="#" name="dbindel">
         <columns>value, dbkey, name, path</columns>
         <file path="****" />
     </table>
</tables>

Le 04/11/2016 à 13:42, Nicola Soranzo a écrit :


Hi Vincent,
have you defined the dbindel table in config/tool_data_table_conf.xml ?

Cheers,
Nicola

On 04/11/16 08:09, Vincent Cahais wrote:


Dear All,

I try to filter options for a param linked to a datatable.
I want to keep only options with the same dbkey as my input file. But i
cannot make it work.

<param name="input" type="data" format="bam" label="Bam file"/>
<param name="dbindel" type="select" force_select="true" label="indel
database">
          <options from_data_table="dbindel" />
          <filter type="data_meta" ref="input" key="dbkey" />
          <filter type="remove_value" key="dbkey"/>
</param>

##dbindels
#<unique_build_id>   <dbkey>   <display_name> <file_path>
hg38    hg38    Human
/data/genome/hg38/dbindel/Mills_and_1000G_gold_standard.indels.hg38.vcf
mm10_1  mm10    Mouse [All]
/data/genomes/mm10/dbindel/mgp.v5.merged.indels.dbSNP142.normed.vcf.gz
mm10_2  mm10    Mouse [129P2_OlaHsd]
/data/genome/mm10/dbindel/129P2_OlaHsd.mgp.v5.indels.dbSNP142.normed.vcf.gz


Thank you for help,

Vincent
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--

Vincent Cahais, Sr Resrch Asst Data Mg/Anlys
Programming Tech, Mecanisms of Carcinogenesis Section

International Agency for Research on Cancer
World Health Organization
150 cours Albert Thomas
69372 Lyon CEDEX 08, France
Off. +33 472 738 487
Mob.
E-mail:caha...@iarc.fr<mailto:caha...@iarc.fr>

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