Hi Pavel
what happens if you connect your galaxy instance to an empty PostgreSQL database, let galaxy build all the tables and then try to upload files.
Regards, Hans-Rudolf On 09/22/2017 10:51 AM, Pavel Fibich wrote:
Hello, do you have any idea why my galaxy 16.07 stop recognizing uploaded files and format of uploaded files is set to the format 'data'? After using older version of database backup, galaxy stop recognizing format of uploaded files (e.g. fasta, fastqc) and everything is set to format 'data'. Uploaded files are OK, I have tested them on other public galaxy servers, where they were recognized well. Before changing database (after the technical problems with the server), recognizing of the files were OK. Even in debugging level I do not see any errors or problems in the log (I have compared logs before changing database with new ones, and there are no differences). From the investigating of upload.py, I guess something happen with galaxy.datatypes.registry (settings and code of galaxy were not changed). Do you have any ideas? I cannot switch the database back and changing file format in Edit attributes is annoying. Best, Pavel ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
