> I can't find any mention of a program called 'wiggles' in the source
> code distribution of bowtie 0.12.7, or out install of 0.12.3. Could
> someone point me to the location of the program in the bowtie file
> structure, or failing that a website for it?

wiggles is in the Tophat distribution, not the Bowtie distribution.

Thanks,
J.
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