My apologies. I mis-spoke. (Mis-typed?) The wiggles program is in the TopHat distribution:
$ ls AUTHORS fix_map_ordering sam_juncs COPYING gtf_juncs segment_juncs README juncs_db sra_to_solid bed_to_juncs library_stats tophat closure_juncs long_spanning_reads tophat_reports contig_to_chr_coords mask_sam wiggles extract_reads prep_reads Very sorry for the mixup. I am cc-ing Adam Baxter, who modified wiggles to run like so: samtools view accepted_hits.bam | wiggles > coverage.wig If you would like a copy of his modified version, feel free to contact him directly. -Ann On 1/12/11 10:50 AM, "Nick Schurch" <[email protected]> wrote: > HI, > > I can't find any mention of a program called 'wiggles' in the source > code distribution of bowtie 0.12.7, or out install of 0.12.3. Could > someone point me to the location of the program in the bowtie file > structure, or failing that a website for it? _______________________________________________ galaxy-user mailing list [email protected] http://lists.bx.psu.edu/listinfo/galaxy-user
