> Can it be integrated into galaxy ?
There are no plans to integrate this tool into Galaxy's main server. However,
should someone outside of the Galaxy team write a patch to integrate this tool
into Galaxy, they could share it via or community site (
http://community.g2.bx.psu.edu/ ) and we would consider adding it to our public
> I found another tool that does this at http://galaxy.fml.mpg.de/
> Under their SAM tools they have a pileup to wiggle conversion tool
I'd recommend copying your dataset to the *.de server, performing the
conversion, and then copying the converted dataset back to the main server.
(Using the 'paste URL' and/or FTP upload option, you should be able to copy
datasets between Galaxy instances. To copy a dataset between Galaxy servers,
copy the URL for a dataset from the 'source' server into the upload form in the
'destination' server and click 'upload')
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