Hi, Sorry, a correction (I had the lengths reversed):
Original .maf > maf to fasta > length is 5572544 Original .maf > CpG mask > maf to fasta > length is 2735329 Thanks, Mike On Thu, Mar 10, 2011 at 8:53 AM, Michael E. Steiper <michaelstei...@gmail.com> wrote: > Hi All, > > I have a general question about CpG masking. I have a .maf file, when > I use the maf to fasta tool, it gives me an alignment of 2,735,329 bp. > But if I CpG mask the .maf file (restricted definition) then I use > the maf to fasta tool, I get a very different alignment length, > 5,572,544 bp. It would be great to know what is the cause of these > differences. > > THANKS! > > Mike > ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
