Hello Daniel,
Currently this is not possible through the Galaxy UI, but is is an
excellent functionality suggestion that our team has been considering
implementing.
As a work-around for now, all of the genomes in Galaxy come from
external public sources: UCSC and others. The genome name/annotation
tags should help you to find the source we used. If there is a
particular genome that you are having trouble finding, please let us
know and we can provide a direct pointer.
For future data questions, the mailing list galaxy-user@lists.bx.psu.edu
would be a good choice.
http://lists.bx.psu.edu/listinfo/galaxy-user
Thanks for using Galaxy!
Best,
Jen
Galaxy team
On 3/10/11 5:53 AM, Michael E. Steiper wrote:
Hi All,
I have a general question about CpG masking. I have a .maf file, when
I use the maf to fasta tool, it gives me an alignment of 2,735,329 bp.
But if I CpG mask the .maf file (restricted definition) then I use
the maf to fasta tool, I get a very different alignment length,
5,572,544 bp. It would be great to know what is the cause of these
differences.
THANKS!
Mike
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Jennifer Jackson
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http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
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