On Mon, Mar 21, 2011 at 1:42 PM, David K Crossman <dkcro...@uab.edu> wrote: > Hello! > > > > I am fairly new to using Galaxy and have a question about > the FASTQ Groomer feature. I have 4 RNA-Seq raw data files that were just > recently generated from Illumina’s NGS instruments.
Very recently? If they are already using Illumina's CASAVA v1.8 pipeline then the FASTQ files will already be in the Sanger FASTQ format: http://seqanswers.com/forums/showthread.php?t=8895 Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/