On Wed, Apr 20, 2011 at 4:00 AM, Edward Dudley <egd...@psu.edu> wrote: > Hi - > > I have a set of 454 reads that have been trimmed and converted to BAM format > using Galaxy, and I can visualize the alignment with E. coli genomes using > the UCSC browser. Problem is, I'd like to display the alignment in Artemis, > but Artemis doesn't seem to want to read the .BAM file downloaded from > Galaxy; I can import my genome sequence but when trying to import the BAM a > blank window with "message" in the header keeps popping up. Anyone else > tried to do this, and is there something about the Galaxy BAM files that > Artemis doesn't like? > > Thanks. > > Ed
Artemis will need the BAM index file (the BAI file). It may also insist on the normal extensions, *.bam and *.bai or *.bam.bai (but not *.dat) Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
